HL_6DDD_063

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6DDD|1|1|G|2778, 6DDD|1|1|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_063 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6DDD|1|1|C|2772
6DDD|1|1|U|2773
6DDD|1|1|G|2774
6DDD|1|1|A|2775
6DDD|1|1|A|2776
6DDD|1|1|A|2777
6DDD|1|1|G|2778
6DDD|1|1|C|2779
6DDD|1|1|A|2780
6DDD|1|1|U|2781
6DDD|1|1|C|2782
6DDD|1|1|U|2783
6DDD|1|1|A|2784
6DDD|1|1|A|2785
6DDD|1|1|G|2786

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain V

50S ribosomal protein L13