HL_6DDG_052
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6DDG|1|1|A|2295, 6DDG|1|1|C|2302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDG_052 not in the Motif Atlas
- Homologous match to HL_4WF9_050
- Geometric discrepancy: 0.0816
- The information below is about HL_4WF9_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6DDG|1|1|C|2291
6DDG|1|1|U|2292
6DDG|1|1|A|2293
6DDG|1|1|A|2294
6DDG|1|1|A|2295
6DDG|1|1|A|2296
6DDG|1|1|G|2297
6DDG|1|1|G|2298
6DDG|1|1|U|2299
6DDG|1|1|A|2300
6DDG|1|1|A|2301
6DDG|1|1|C|2302
6DDG|1|1|G|2303
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L16
Coloring options: