HL_6DDG_064

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6DDG|1|1|G|2778, 6DDG|1|1|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1124

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6DDG|1|1|C|2772
6DDG|1|1|U|2773
6DDG|1|1|G|2774
6DDG|1|1|A|2775
6DDG|1|1|A|2776
6DDG|1|1|A|2777
6DDG|1|1|G|2778
6DDG|1|1|C|2779
6DDG|1|1|A|2780
6DDG|1|1|U|2781
6DDG|1|1|C|2782
6DDG|1|1|U|2783
6DDG|1|1|A|2784
6DDG|1|1|A|2785
6DDG|1|1|G|2786

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain V

50S ribosomal protein L13