HL_6DN3_001

3D structure

PDB id

6DN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

6DN3|1|X|U|23, 6DN3|1|X|U|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DN3_001 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.1028

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6DN3|1|X|G|17
6DN3|1|X|U|18
6DN3|1|X|G|19
6DN3|1|X|A|20
6DN3|1|X|A|21
6DN3|1|X|A|22
6DN3|1|X|U|23
6DN3|1|X|U|24
6DN3|1|X|C|25

Current chains

Chain X

RNA RIBOSWITCH

Nearby chains

Chain Y

RNA (56-MER)