HL_6DNC_001
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_001 not in the Motif Atlas
- Homologous match to HL_5J7L_001
- Geometric discrepancy: 0.118
- The information below is about HL_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DNC|1|A|U|12
6DNC|1|A|U|13
6DNC|1|A|U|14
6DNC|1|A|G|15
6DNC|1|A|A|16
6DNC|1|A|U|17
6DNC|1|A|C|18
6DNC|1|A|A|19
6DNC|1|A|U|20
6DNC|1|A|G|21
6DNC|1|A|G|22
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain KA
- mRNA
- Chain RA
- 30S ribosomal protein S5
- Chain YA
- 30S ribosomal protein S12
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