6DNC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6DNC_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_6DNC_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.2 | |
| HL_6DNC_008 | 1/A/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6DNC_017 | 1/A/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6DNC_021 | 1/A/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_6DNC_029 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6DNC_031 | 1/A/1515:1520 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_6DNC_032 | 1/B/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_6DNC_034 | 1/B/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6DNC_037 | 1/B/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_6DNC_038 | 1/B/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6DNC_039 | 1/B/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6DNC_041 | 1/B/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6DNC_042 | 1/B/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6DNC_045 | 1/B/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_6DNC_047 | 1/B/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_6DNC_052 | 1/B/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6DNC_053 | 1/B/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_6DNC_054 | 1/B/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6DNC_056 | 1/B/954:963 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.1 | |
| HL_6DNC_057 | 1/B/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_6DNC_063 | 1/B/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6DNC_065 | 1/B/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6DNC_066 | 1/B/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_6DNC_070 | 1/B/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_6DNC_071 | 1/B/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6DNC_072 | 1/B/1691:1696 | UNCG | homologous HL_7A0S_042 HL_61337.2 | |
| HL_6DNC_075 | 1/B/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6DNC_078 | 1/B/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6DNC_079 | 1/B/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_6DNC_080 | 1/B/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6DNC_083 | 1/B/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_6DNC_084 | 1/B/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_6DNC_112 | 1/B/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6DNC_089 | 1/B/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6DNC_095 | 1/B/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6DNC_098 | 1/B/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6DNC_100 | 1/C/34:48 | No text annotation | geometric HL_5J7L_215 NA | |
| HL_6DNC_101 | 1/C/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6DNC_002 | No text annotation | ||
| HL_6DNC_003 | GNRA | ||
| HL_6DNC_004 | GNRA | ||
| HL_6DNC_005 | Mini UNCG | ||
| HL_6DNC_006 | GNRA related | ||
| HL_6DNC_009 | UNCG | ||
| HL_6DNC_010 | GNRA | ||
| HL_6DNC_011 | No text annotation | ||
| HL_6DNC_012 | GNRA wlth extra near cWW | ||
| HL_6DNC_013 | No text annotation | ||
| HL_6DNC_014 | No text annotation | ||
| HL_6DNC_015 | No text annotation | ||
| HL_6DNC_016 | GNRA | ||
| HL_6DNC_018 | No text annotation | ||
| HL_6DNC_019 | GNRA | ||
| HL_6DNC_020 | GNRA | ||
| HL_6DNC_022 | GNRA | ||
| HL_6DNC_023 | GNRA | ||
| HL_6DNC_024 | T-loop related | ||
| HL_6DNC_025 | No text annotation | ||
| HL_6DNC_026 | GNRA | ||
| HL_6DNC_027 | GNRA | ||
| HL_6DNC_028 | T-loop with 3 stacked bulged bases | ||
| HL_6DNC_030 | UNCG | ||
| HL_6DNC_033 | No text annotation | ||
| HL_6DNC_035 | No text annotation | ||
| HL_6DNC_036 | No text annotation | ||
| HL_6DNC_040 | T-loop with 1 bulged base | ||
| HL_6DNC_108 | No text annotation | ||
| HL_6DNC_043 | Pseudoknot geometry | ||
| HL_6DNC_044 | GNRA | ||
| HL_6DNC_046 | No text annotation | ||
| HL_6DNC_109 | No text annotation | ||
| HL_6DNC_048 | No text annotation | ||
| HL_6DNC_049 | GNRA | ||
| HL_6DNC_050 | GNRA wlth extra near cWW | ||
| HL_6DNC_110 | No text annotation | ||
| HL_6DNC_051 | GNRA wlth tandem sheared | ||
| HL_6DNC_055 | No text annotation | ||
| HL_6DNC_111 | No text annotation | ||
| HL_6DNC_058 | No text annotation | ||
| HL_6DNC_059 | No text annotation | ||
| HL_6DNC_060 | No text annotation | ||
| HL_6DNC_061 | GNRA | ||
| HL_6DNC_062 | T-loop with 2 stacked bulged bases | ||
| HL_6DNC_064 | GNRA | ||
| HL_6DNC_067 | Pseudoknot geometry with 3' bulge | ||
| HL_6DNC_068 | No text annotation | ||
| HL_6DNC_069 | No text annotation | ||
| HL_6DNC_073 | No text annotation | ||
| HL_6DNC_074 | No text annotation | ||
| HL_6DNC_076 | GNRA related | ||
| HL_6DNC_077 | GNRA variation | ||
| HL_6DNC_081 | No text annotation | ||
| HL_6DNC_082 | No text annotation | ||
| HL_6DNC_085 | No text annotation | ||
| HL_6DNC_086 | Pseudoknot geometry | ||
| HL_6DNC_087 | GNRA | ||
| HL_6DNC_088 | GNRA | ||
| HL_6DNC_090 | No text annotation | ||
| HL_6DNC_091 | GNRA variation | ||
| HL_6DNC_092 | No text annotation | ||
| HL_6DNC_093 | GNRA | ||
| HL_6DNC_094 | GNRA | ||
| HL_6DNC_096 | No text annotation | ||
| HL_6DNC_097 | UNCG variation | ||
| HL_6DNC_114 | No text annotation | ||
| HL_6DNC_099 | GNRA | ||
| HL_6DNC_113 | No text annotation | ||
| HL_6DNC_102 | No text annotation | ||
| HL_6DNC_103 | tRNA anticodon loop | ||
| HL_6DNC_104 | T-loop with 2 stacked bulged bases | ||
| HL_6DNC_105 | tRNA D-loop | ||
| HL_6DNC_106 | tRNA anticodon loop | ||
| HL_6DNC_107 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6DNC_003 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_6DNC_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_6DNC_015 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6DNC_018 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_6DNC_025 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6DNC_030 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_6DNC_035 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_6DNC_037 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6DNC_180 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_6DNC_040 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_6DNC_041 | 1/A/953:954, 1/A/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6DNC_054 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_6DNC_057 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_6DNC_058 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6DNC_059 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.2 | |
| IL_6DNC_067 | 1/B/36:37, 1/B/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_6DNC_069 | 1/B/81:85, 1/B/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_6DNC_071 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_6DNC_072 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6DNC_075 | 1/B/293:295, 1/B/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6DNC_076 | 1/B/481:484, 1/B/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_6DNC_078 | 1/B/564:566, 1/B/575:577 | Isolated non-canonical cWW pair | geometric IL_5MWI_001 IL_68118.2 | |
| IL_6DNC_080 | 1/B/672:674, 1/B/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_6DNC_081 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_6DNC_082 | 1/B/697:698, 1/B/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_6DNC_085 | 1/B/738:740, 1/B/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_6DNC_086 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_6DNC_092 | 1/B/862:863, 1/B/913:915 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_6DNC_093 | 1/B/864:868, 1/B/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_6DNC_097 | 1/B/994:996, 1/B/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6DNC_098 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_6DNC_100 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_6DNC_101 | 1/B/1018:1024, 1/B/1140:1144 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_6DNC_102 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6DNC_108 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
| IL_6DNC_109 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_6DNC_110 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6DNC_111 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6DNC_112 | 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.2 | |
| IL_6DNC_113 | 1/B/1319:1323, 1/B/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6DNC_119 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_6DNC_126 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6DNC_128 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6DNC_186 | 1/B/1666:1674, 1/B/1990:1994 | No text annotation | homologous IL_7A0S_109 IL_80252.1 | |
| IL_6DNC_129 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_28217.1 | |
| IL_6DNC_130 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6DNC_133 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6DNC_134 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_6DNC_135 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6DNC_187 | 1/B/1841:1842, 1/B/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6DNC_140 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_6DNC_142 | 1/B/2054:2056, 1/B/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6DNC_143 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6DNC_189 | 1/B/2067:2071, 1/B/2438:2443 | No text annotation | ||
| IL_6DNC_144 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6DNC_145 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.1 | |
| IL_6DNC_154 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.2 | |
| IL_6DNC_155 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.8 | |
| IL_6DNC_157 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_6DNC_159 | 1/B/2507:2509, 1/B/2579:2582 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_6DNC_160 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6DNC_161 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6DNC_162 | 1/B/2522:2523, 1/B/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_6DNC_164 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_6DNC_165 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6DNC_167 | 1/B/2680:2684, 1/B/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.12 | |
| IL_6DNC_168 | 1/B/2687:2691, 1/B/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_6DNC_170 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_6DNC_173 | 1/B/2843:2846, 1/B/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6DNC_174 | 1/B/2847:2852, 1/B/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6DNC_178 | 1/C/71:79, 1/C/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6DNC_001 | Single bulged G | ||
| IL_6DNC_002 | Single bulged A | ||
| IL_6DNC_004 | Minor groove platform | ||
| IL_6DNC_006 | Minor groove platform with extra cWW | ||
| IL_6DNC_007 | Minor groove platform | ||
| IL_6DNC_008 | Stack outside cWW | ||
| IL_6DNC_009 | Isolated non-canonical cWW pair | ||
| IL_6DNC_010 | Minor groove platform related | ||
| IL_6DNC_011 | Isolated cWH basepair | ||
| IL_6DNC_012 | tWH-tWH-tHW-tHW | ||
| IL_6DNC_013 | Minor groove platform | ||
| IL_6DNC_014 | Kink-turn with non-sequential stacking | ||
| IL_6DNC_016 | C-loop | ||
| IL_6DNC_017 | C-loop | ||
| IL_6DNC_019 | No text annotation | ||
| IL_6DNC_020 | No text annotation | ||
| IL_6DNC_179 | No text annotation | ||
| IL_6DNC_021 | tSH-tHW-tWW | ||
| IL_6DNC_022 | No text annotation | ||
| IL_6DNC_023 | SSU/LSU pseudoknot | ||
| IL_6DNC_024 | Kink-turn related | ||
| IL_6DNC_026 | tSH-tHW-tHS | ||
| IL_6DNC_027 | Major groove platform | ||
| IL_6DNC_028 | Major groove minor groove platform; mini C-loop | ||
| IL_6DNC_029 | No text annotation | ||
| IL_6DNC_031 | Single stack bend | ||
| IL_6DNC_032 | Tandem non-canonical cWW pairs | ||
| IL_6DNC_033 | No text annotation | ||
| IL_6DNC_034 | Kink-turn | ||
| IL_6DNC_036 | tSH-tHW-tHS | ||
| IL_6DNC_038 | Isolated non-canonical cWW with bulges | ||
| IL_6DNC_039 | Single bulged G | ||
| IL_6DNC_042 | Minor groove platform | ||
| IL_6DNC_043 | Single stack bend | ||
| IL_6DNC_181 | No text annotation | ||
| IL_6DNC_044 | No text annotation | ||
| IL_6DNC_045 | Single bulged U | ||
| IL_6DNC_046 | Tandem non-canonical cWW pairs | ||
| IL_6DNC_182 | Isolated cWS basepair | ||
| IL_6DNC_047 | Minor groove platform | ||
| IL_6DNC_048 | Single bulged U | ||
| IL_6DNC_049 | Isolated non-canonical cWW pair | ||
| IL_6DNC_050 | No text annotation | ||
| IL_6DNC_051 | Minor groove platform | ||
| IL_6DNC_052 | No text annotation | ||
| IL_6DNC_053 | No text annotation | ||
| IL_6DNC_183 | No text annotation | ||
| IL_6DNC_055 | Double sheared with non-canonical cWW | ||
| IL_6DNC_056 | No text annotation | ||
| IL_6DNC_060 | Decoding loop related | ||
| IL_6DNC_184 | Isolated non-canonical cWW pair | ||
| IL_6DNC_061 | Tandem non-canonical cWW pairs | ||
| IL_6DNC_062 | Double sheared | ||
| IL_6DNC_063 | Triple sheared related | ||
| IL_6DNC_064 | Single bulged A | ||
| IL_6DNC_065 | No text annotation | ||
| IL_6DNC_066 | Triple sheared with non-canonical cWW | ||
| IL_6DNC_068 | Minor groove platform | ||
| IL_6DNC_070 | Single stack bend | ||
| IL_6DNC_073 | No text annotation | ||
| IL_6DNC_074 | No text annotation | ||
| IL_6DNC_077 | Double sheared | ||
| IL_6DNC_079 | AAA cross-strand stack | ||
| IL_6DNC_083 | Single bulged G | ||
| IL_6DNC_084 | Triple sheared | ||
| IL_6DNC_087 | Single stack bend | ||
| IL_6DNC_088 | 90 degree turn | ||
| IL_6DNC_185 | No text annotation | ||
| IL_6DNC_089 | Stack outside cWW | ||
| IL_6DNC_090 | Single stack bend | ||
| IL_6DNC_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6DNC_094 | Isolated non-canonical cWW pair | ||
| IL_6DNC_095 | Double sheared with non-canonical cWW | ||
| IL_6DNC_096 | No text annotation | ||
| IL_6DNC_099 | SSU/LSU pseudoknot | ||
| IL_6DNC_103 | Isolated non-canonical cWW pair | ||
| IL_6DNC_104 | Tandem non-canonical cWW pairs | ||
| IL_6DNC_105 | Kink-turn | ||
| IL_6DNC_106 | No text annotation | ||
| IL_6DNC_191 | No text annotation | ||
| IL_6DNC_107 | Major groove platform with extra cWW | ||
| IL_6DNC_114 | UAA/GAN | ||
| IL_6DNC_115 | tSH-tHW-tHS | ||
| IL_6DNC_116 | No text annotation | ||
| IL_6DNC_117 | UAA/GAN | ||
| IL_6DNC_118 | Tandem non-canonical cWW pairs | ||
| IL_6DNC_120 | Single bulged U | ||
| IL_6DNC_121 | No text annotation | ||
| IL_6DNC_122 | tSH-tHW-tHS | ||
| IL_6DNC_123 | 180 degree turn | ||
| IL_6DNC_124 | Single bulged A | ||
| IL_6DNC_125 | UAA/GAN variation | ||
| IL_6DNC_127 | Isolated tWW turn | ||
| IL_6DNC_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6DNC_132 | Triple sheared | ||
| IL_6DNC_136 | Isolated non-canonical cWW pair | ||
| IL_6DNC_137 | Major groove minor groove platform; mini C-loop | ||
| IL_6DNC_188 | No text annotation | ||
| IL_6DNC_138 | UAA/GAN related | ||
| IL_6DNC_139 | Bulged stacked bases | ||
| IL_6DNC_141 | Major groove platform | ||
| IL_6DNC_146 | Isolated non-canonical cWW pair | ||
| IL_6DNC_147 | No text annotation | ||
| IL_6DNC_190 | Isolated non-canonical cWW pair | ||
| IL_6DNC_148 | No text annotation | ||
| IL_6DNC_149 | No text annotation | ||
| IL_6DNC_150 | No text annotation | ||
| IL_6DNC_151 | Single bulged U | ||
| IL_6DNC_152 | Double sheared | ||
| IL_6DNC_153 | No text annotation | ||
| IL_6DNC_156 | Major groove platform with extra pair | ||
| IL_6DNC_158 | Double sheared with non-canonical cWW | ||
| IL_6DNC_163 | Isolated cWH basepair | ||
| IL_6DNC_166 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6DNC_169 | Multiple bulged bases | ||
| IL_6DNC_192 | Single bulged A | ||
| IL_6DNC_171 | No text annotation | ||
| IL_6DNC_172 | Major groove intercalation | ||
| IL_6DNC_175 | Major groove intercalation | ||
| IL_6DNC_176 | No text annotation | ||
| IL_6DNC_177 | Major groove minor groove platform; mini C-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6DNC_001 | 1/A/46:47, 1/A/361:369, 1/A/392:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6DNC_027 | 1/A/46:52, 1/A/359:369, 1/A/392:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6DNC_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_6DNC_028 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_6DNC_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6DNC_007 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6DNC_009 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6DNC_011 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6DNC_030 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_6DNC_012 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_6DNC_013 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6DNC_031 | 1/B/30:31, 1/B/474:484, 1/B/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_6DNC_032 | 1/B/32:35, 1/B/445:461, 1/B/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6DNC_014 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6DNC_034 | 1/B/297:301, 1/B/316:325, 1/B/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6DNC_015 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6DNC_016 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6DNC_018 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6DNC_019 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_6DNC_020 | 1/B/1344:1349, 1/B/1382:1385, 1/B/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6DNC_021 | 1/B/2091:2093, 1/B/2196:2200, 1/B/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6DNC_037 | 1/B/2282:2284, 1/B/2384:2395, 1/B/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6DNC_022 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation | ||
| J3_6DNC_023 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6DNC_025 | 1/B/2812:2815, 1/B/2831:2836, 1/B/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6DNC_026 | 1/C/10:16, 1/C/68:70, 1/C/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_6DNC_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6DNC_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_6DNC_004 | 1/B/268:269, 1/B/370:375, 1/B/399:406, 1/B/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6DNC_006 | 1/B/1270:1276, 1/B/1294:1295, 1/B/1645:1648, 1/B/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6DNC_007 | 1/B/1310:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6DNC_008 | 1/B/1313:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6DNC_010 | 1/B/1772:1776, 1/B/1788:1792, 1/B/1827:1830, 1/B/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.6 | |
| J4_6DNC_011 | 1/B/1833:1835, 1/B/1905:1906, 1/B/1924:1933, 1/B/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6DNC_012 | 1/B/2285:2289, 1/B/2343:2347, 1/B/2370:2372, 1/B/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_6DNC_015 | 1/LA/7:10, 1/LA/25:27, 1/LA/43:49, 1/LA/65:66 | tRNA junction | homologous J4_5E81_027 NA | |
| J5_6DNC_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | ||
| J5_6DNC_010 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6DNC_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6DNC_004 | 1/B/47:54, 1/B/116:121, 1/B/130:131, 1/B/148:150, 1/B/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6DNC_005 | 1/B/531:533, 1/B/560:564, 1/B/577:579, 1/B/1261:1262, 1/B/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6DNC_006 | 1/B/584:589, 1/B/668:671, 1/B/809:812, 1/B/1195:1196, 1/B/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6DNC_007 | 1/B/1674:1682, 1/B/1706:1707, 1/B/1751:1752, 1/B/1756:1764, 1/B/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6DNC_008 | 1/B/2057:2064, 1/B/2446:2453, 1/B/2500:2507, 1/B/2582:2588, 1/B/2606:2611 | No text annotation | ||
| J5_6DNC_009 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2282, 1/B/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_6DNC_001 | 1/B/45:46, 1/B/179:183, 1/B/214:224, 1/B/231:235, 1/B/262:266, 1/B/426:433 | No text annotation | ||
| J6_6DNC_002 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2284, 1/B/2384:2395, 1/B/2421:2435 | No text annotation | ||
| J7_6DNC_001 | 1/B/8:15, 1/B/525:531, 1/B/2018:2023, 1/B/2040:2043, 1/B/2625:2630, 1/B/2788:2789, 1/B/2894:2895 | No text annotation | ||
| J7_6DNC_002 | 1/B/817:822, 1/B/835:837, 1/B/942:946, 1/B/971:976, 1/B/987:991, 1/B/1163:1164, 1/B/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6DNC_003 | No text annotation | ||
| J3_6DNC_005 | No text annotation | ||
| J3_6DNC_006 | No text annotation | ||
| J3_6DNC_008 | No text annotation | ||
| J3_6DNC_029 | No text annotation | ||
| J3_6DNC_038 | No text annotation | ||
| J3_6DNC_010 | No text annotation | ||
| J3_6DNC_033 | No text annotation | ||
| J3_6DNC_017 | No text annotation | ||
| J3_6DNC_035 | No text annotation | ||
| J3_6DNC_036 | No text annotation | ||
| J3_6DNC_024 | No text annotation | ||
| J4_6DNC_002 | No text annotation | ||
| J4_6DNC_005 | No text annotation | ||
| J4_6DNC_009 | No text annotation | ||
| J4_6DNC_013 | No text annotation | ||
| J4_6DNC_014 | tRNA junction | ||
| J5_6DNC_002 | No text annotation |
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