HL_6DNC_005

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

6DNC|1|A|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_005 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2614

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6DNC|1|A|C|206
6DNC|1|A|C|207
6DNC|1|A|U|208
6DNC|1|A|U|209
6DNC|1|A|C|210
6DNC|1|A|G|211
6DNC|1|A|G|212
6DNC|1|A|G|213

Current chains

Chain A

16S ribosomal RNA

Nearby chains