HL_6DNC_011

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_011 not in the Motif Atlas

Geometric match to HL_3SIU_002

Geometric discrepancy: 0.3942

The information below is about HL_3SIU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66103.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6DNC|1|A|C|419
6DNC|1|A|U|420
6DNC|1|A|U|421
6DNC|1|A|C|422
6DNC|1|A|G|423
6DNC|1|A|G|424

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain PA

30S ribosomal protein S3

Chain QA

30S ribosomal protein S4