HL_6DNC_012

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6DNC|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2265

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6DNC|1|A|G|462
6DNC|1|A|U|463
6DNC|1|A|U|464
6DNC|1|A|A|465
6DNC|1|A|A|466
6DNC|1|A|U|467
6DNC|1|A|A|468
6DNC|1|A|C|469
6DNC|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains