HL_6DNC_025

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

6DNC|1|A|C|1136, 6DNC|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2338

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DNC|1|A|G|1134
6DNC|1|A|U|1135
6DNC|1|A|C|1136
6DNC|1|A|C|1137
6DNC|1|A|G|1138
6DNC|1|A|G|1139
6DNC|1|A|C|1140

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain VA

30S ribosomal protein S9