HL_6DNC_026

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6DNC|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_026 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3366

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6DNC|1|A|U|1165
6DNC|1|A|G|1166
6DNC|1|A|A|1167
6DNC|1|A|U|1168
6DNC|1|A|A|1169
6DNC|1|A|A|1170
6DNC|1|A|A|1171

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain HB

30S ribosomal protein S21

Chain OA

30S ribosomal protein S2