HL_6DNC_030

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6DNC|1|A|U|1451, 6DNC|1|A|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_030 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.4473

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6DNC|1|A|C|1449
6DNC|1|A|U|1450
6DNC|1|A|U|1451
6DNC|1|A|C|1452
6DNC|1|A|G|1453
6DNC|1|A|G|1454

Current chains

Chain A

16S ribosomal RNA

Nearby chains