HL_6DNC_039

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_039 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1528

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6DNC|1|B|C|246
6DNC|1|B|G|247
6DNC|1|B|G|248
6DNC|1|B|C|249
6DNC|1|B|G|250
6DNC|1|B|A|251
6DNC|1|B|G|252

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain IA

50S ribosomal protein L35

Chain P

50S ribosomal protein L15