HL_6DNC_047
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6DNC|1|B|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_047 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1846
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
6DNC|1|B|U|566
6DNC|1|B|U|567
6DNC|1|B|U|568
6DNC|1|B|U|569
6DNC|1|B|G|570
6DNC|1|B|U|571
6DNC|1|B|A|572
6DNC|1|B|U|573
6DNC|1|B|A|574
6DNC|1|B|A|575
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain P
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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