HL_6DNC_050

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

6DNC|1|B|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_050 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3402

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6DNC|1|B|C|640
6DNC|1|B|U|641
6DNC|1|B|U|642
6DNC|1|B|A|643
6DNC|1|B|A|644
6DNC|1|B|C|645
6DNC|1|B|U|646
6DNC|1|B|G|647
6DNC|1|B|G|648

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain GA

50S ribosomal protein L33

Chain IA

50S ribosomal protein L35