HL_6DNC_051
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUAACAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_051 not in the Motif Atlas
- Homologous match to HL_5J7L_154
- Geometric discrepancy: 0.1193
- The information below is about HL_5J7L_154
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6DNC|1|B|G|712
6DNC|1|B|G|713
6DNC|1|B|U|714
6DNC|1|B|A|715
6DNC|1|B|A|716
6DNC|1|B|C|717
6DNC|1|B|A|718
6DNC|1|B|C|719
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- 30S ribosomal protein S15
- Chain F
- 50S ribosomal protein L2
Coloring options: