HL_6DNC_055
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCAUCCCGAC
- Length
- 11 nucleotides
- Bulged bases
- 6DNC|1|B|A|886, 6DNC|1|B|G|891
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_055 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2608
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DNC|1|B|G|883
6DNC|1|B|U|884
6DNC|1|B|C|885
6DNC|1|B|A|886
6DNC|1|B|U|887
6DNC|1|B|C|888
6DNC|1|B|C|889
6DNC|1|B|C|890
6DNC|1|B|G|891
6DNC|1|B|A|892
6DNC|1|B|C|893
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain FB
- 30S ribosomal protein S19
- Chain ZA
- 30S ribosomal protein S13
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