3D structure

PDB id
6DNC (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUCAUCCCGAC
Length
11 nucleotides
Bulged bases
6DNC|1|B|A|886, 6DNC|1|B|G|891
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6DNC_055 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.2608
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_33487.1
Basepair signature
cWW-cWW
Number of instances in this motif group
2

Unit IDs

6DNC|1|B|G|883
6DNC|1|B|U|884
6DNC|1|B|C|885
6DNC|1|B|A|886
6DNC|1|B|U|887
6DNC|1|B|C|888
6DNC|1|B|C|889
6DNC|1|B|C|890
6DNC|1|B|G|891
6DNC|1|B|A|892
6DNC|1|B|C|893

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain FB
30S ribosomal protein S19
Chain ZA
30S ribosomal protein S13

Coloring options:


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