HL_6DNC_056
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 6DNC|1|B|U|958, 6DNC|1|B|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_056 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2759
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|G|954
6DNC|1|B|U|955
6DNC|1|B|G|956
6DNC|1|B|C|957
6DNC|1|B|U|958
6DNC|1|B|A|959
6DNC|1|B|A|960
6DNC|1|B|C|961
6DNC|1|B|G|962
6DNC|1|B|U|963
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S ribosomal protein L16
Coloring options: