HL_6DNC_057

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_057 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.242

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6DNC|1|B|G|978
6DNC|1|B|A|979
6DNC|1|B|A|980
6DNC|1|B|A|981
6DNC|1|B|C|982
6DNC|1|B|A|983
6DNC|1|B|A|984
6DNC|1|B|C|985

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain DA

50S ribosomal protein L30

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21