HL_6DNC_073

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6DNC|1|B|U|1729, 6DNC|1|B|C|1730, 6DNC|1|B|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_073 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2551

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6DNC|1|B|C|1727
6DNC|1|B|C|1728
6DNC|1|B|U|1729
6DNC|1|B|C|1730
6DNC|1|B|G|1731
6DNC|1|B|C|1732
6DNC|1|B|G|1733

Current chains

Chain B

23S ribosomal RNA

Nearby chains