HL_6DNC_079

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6DNC|1|B|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_079 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1247

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6DNC|1|B|G|1949
6DNC|1|B|G|1950
6DNC|1|B|U|1951
6DNC|1|B|A|1952
6DNC|1|B|A|1953
6DNC|1|B|G|1954
6DNC|1|B|U|1955
6DNC|1|B|U|1956
6DNC|1|B|C|1957

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain MA

Peptide chain release factor 1

Chain O

50S ribosomal protein L14