HL_6DNC_081

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_081 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2958

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6DNC|1|B|A|2142
6DNC|1|B|C|2143
6DNC|1|B|G|2144
6DNC|1|B|C|2145
6DNC|1|B|C|2146
6DNC|1|B|A|2147
6DNC|1|B|G|2148
6DNC|1|B|U|2149

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain XA

30S ribosomal protein S11