HL_6DNC_090

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_090 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1698

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6DNC|1|B|A|2471
6DNC|1|B|G|2472
6DNC|1|B|U|2473
6DNC|1|B|U|2474
6DNC|1|B|C|2475
6DNC|1|B|A|2476
6DNC|1|B|U|2477
6DNC|1|B|A|2478
6DNC|1|B|U|2479

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L6

Chain JA

50S ribosomal protein L36

Chain MA

Peptide chain release factor 1