HL_6DNC_100
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 6DNC|1|C|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_100 not in the Motif Atlas
- Geometric match to HL_5J7L_215
- Geometric discrepancy: 0.1626
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6DNC|1|C|A|34
6DNC|1|C|C|35
6DNC|1|C|C|36
6DNC|1|C|C|37
6DNC|1|C|C|38
6DNC|1|C|A|39
6DNC|1|C|U|40
6DNC|1|C|G|41
6DNC|1|C|C|42
6DNC|1|C|C|43
6DNC|1|C|G|44
6DNC|1|C|A|45
6DNC|1|C|A|46
6DNC|1|C|C|47
6DNC|1|C|U|48
Current chains
- Chain C
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain EA
- 50S ribosomal protein L31
- Chain I
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L18
Coloring options: