HL_6DNC_105

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6DNC|1|LA|C|16, 6DNC|1|LA|G|18, 6DNC|1|LA|G|19, 6DNC|1|LA|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_105 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1392

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6DNC|1|LA|C|13
6DNC|1|LA|A|14
6DNC|1|LA|G|15
6DNC|1|LA|C|16
6DNC|1|LA|C|17
6DNC|1|LA|U|17|||A
6DNC|1|LA|G|18
6DNC|1|LA|G|19
6DNC|1|LA|U|20
6DNC|1|LA|A|21
6DNC|1|LA|G|22

Current chains

Chain LA

tRNA(fMet)

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain I

50S ribosomal protein L5