HL_6DNC_107
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_107 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.1768
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
6DNC|1|LA|G|53
6DNC|1|LA|U|54
6DNC|1|LA|U|55
6DNC|1|LA|C|56
6DNC|1|LA|A|57
6DNC|1|LA|A|58
6DNC|1|LA|A|59
6DNC|1|LA|U|60
6DNC|1|LA|C|61
Current chains
- Chain LA
- tRNA(fMet)
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L16
Coloring options: