HL_6DTI_012

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAACCCCCGACGAGGGGACUGAC

Length

24 nucleotides

Bulged bases

6DTI|1|A|C|456, 6DTI|1|A|G|459, 6DTI|1|A|G|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DTI|1|A|G|445
6DTI|1|A|A|446
6DTI|1|A|A|447
6DTI|1|A|A|448
6DTI|1|A|C|449
6DTI|1|A|C|450
6DTI|1|A|C|451
6DTI|1|A|C|452
6DTI|1|A|C|453
6DTI|1|A|G|454
6DTI|1|A|A|455
6DTI|1|A|C|456
6DTI|1|A|G|457
6DTI|1|A|A|458
6DTI|1|A|G|459
6DTI|1|A|G|460
6DTI|1|A|G|461
6DTI|1|A|G|462
6DTI|1|A|A|463
6DTI|1|A|C|464
6DTI|1|A|U|465
6DTI|1|A|G|466
6DTI|1|A|A|467
6DTI|1|A|C|468

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16