RNA 3D Hub //

6DTI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6DTI_0011/A/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_6DTI_0021/A/78:84No text annotation
homologous
HL_4LFB_002
HL_31585.4
HL_6DTI_0031/A/152:157GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_6DTI_0041/A/186:192No text annotation
homologous
HL_4LFB_004
HL_48417.5
HL_6DTI_0051/A/208:212Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_6DTI_0061/A/255:263GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_6DTI_0071/A/292:297GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_6DTI_0081/A/316:329No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_6DTI_0091/A/338:343UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6DTI_0101/A/375:380GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_6DTI_0111/A/414:421No text annotation
HL_6DTI_0121/A/445:468No text annotation
HL_6DTI_0131/A/506:511No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6DTI_0141/A/601:607No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_6DTI_0151/A/673:682No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_6DTI_0161/A/710:715GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_6DTI_0171/A/770:780No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_6DTI_0181/A/822:826Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_6DTI_0191/A/840:845GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_6DTI_0201/A/875:880GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_6DTI_0211/A/941:950No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_6DTI_0221/A/990:995GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_6DTI_0231/A/1054:1059GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_6DTI_0241/A/1067:1074T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_6DTI_0251/A/1112:1118No text annotation
homologous
HL_5J7L_025
HL_87954.2
HL_6DTI_0261/A/1143:1148GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_6DTI_0271/A/1242:1247GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_6DTI_0281/A/1291:1300T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_6DTI_0291/A/1333:1343No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_6DTI_0301/A/1424:1429UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_6DTI_0311/A/1487:1492GNRA
homologous
HL_4LFB_032
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_6DTI_032No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6DTI_0011/A/30:32,
1/A/536:537		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_6DTI_0021/A/44:45,
1/A/392:394		Single bulged A
homologous
IL_4LFB_002
IL_31462.6
IL_6DTI_0031/A/47:52,
1/A/355:357		No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_6DTI_0041/A/54:56,
1/A/352:353		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_6DTI_0051/A/63:66,
1/A/96:97		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_6DTI_0061/A/67:69,
1/A/93:95		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_6DTI_0071/A/122:125,
1/A/227:228		Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_6DTI_0081/A/126:130,
1/A/223:226		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_6DTI_0091/A/142:147,
1/A/162:168		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_6DTI_0101/A/180:182,
1/A/196:198		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_6DTI_0111/A/238:243,
1/A/273:280		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_6DTI_0121/A/245:248,
1/A/270:271		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6DTI_0131/A/288:289,
1/A/300:304		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_6DTI_0141/A/363:365,
1/A/388:389		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_6DTI_0151/A/367:371,
1/A/385:386		C-loop
geometric
IL_4LFB_015
IL_03109.3
IL_6DTI_0161/A/371:372,
1/A/383:385		Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_6DTI_0171/A/441:445,
1/A/468:473		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_6DTI_0181/A/488:495,
1/A/524:525		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_6DTI_0191/A/499:505,
1/A/512:520		Kink-turn related
geometric
IL_4V88_415
NA
IL_6DTI_0201/A/553:559,
1/A/858:859		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_6DTI_0211/A/564:568,
1/A/741:745		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_6DTI_0221/A/578:580,
1/A/628:629		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_6DTI_0231/A/581:582,
1/A/624:627		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_6DTI_0241/A/589:596,
1/A/612:617		No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_6DTI_0251/A/638:639,
1/A/735:738		Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_6DTI_0261/A/641:642,
1/A/731:733		Major groove platform
homologous
IL_6CZR_140
NA
IL_6DTI_0271/A/645:650,
1/A/724:728		No text annotation
IL_6DTI_0601/A/657:661,
1/A/697:701		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_6DTI_0291/A/667:672,
1/A/683:691		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_6DTI_0301/A/758:762,
1/A/788:789		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_6DTI_0311/A/763:767,
1/A/783:787		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_6DTI_0321/A/865:872,
1/A/883:888		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_6DTI_0331/A/900:901,
1/A/1370:1372		Single bulged A
homologous
IL_4LFB_035
IL_31462.6
IL_6DTI_0341/A/903:905,
1/A/1367:1368		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_6DTI_0351/A/911:913,
1/A/1357:1361		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_6DTI_0361/A/931:932,
1/A/1203:1205		Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_6DTI_0371/A/971:975,
1/A/1022:1023		Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_6DTI_0651/A/979:985,
1/A/1000:1018		No text annotation
IL_6DTI_0381/A/1026:1028,
1/A/1185:1186		Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_6DTI_0391/A/1030:1034,
1/A/1181:1183		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_6DTI_0401/A/1035:1036,
1/A/1176:1180		Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_6DTI_0411/A/1038:1039,
1/A/1172:1174		Single bulged U
homologous
IL_6CZR_156
NA
IL_6DTI_0421/A/1039:1041,
1/A/1170:1172		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_6DTI_0431/A/1100:1106,
1/A/1121:1129		No text annotation
IL_6DTI_0661/A/1102:1110,
1/A/1120:1127		No text annotation
IL_6DTI_0441/A/1106:1110,
1/A/1120:1121		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_6DTI_0451/A/1136:1139,
1/A/1152:1158		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_6DTI_0461/A/1224:1230,
1/A/1261:1267		No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_6DTI_0471/A/1232:1235,
1/A/1254:1259		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_6DTI_0481/A/1236:1237,
1/A/1251:1253		Not an internal loop
homologous
IL_4LFB_053
NA
IL_6DTI_0641/A/1236:1239,
1/A/1250:1253		Double sheared
homologous
IL_4LFB_067
IL_09705.15
IL_6DTI_0491/A/1237:1239,
1/A/1250:1251		Minor groove platform
geometric
IL_4LFB_054
IL_51454.3
IL_6DTI_0501/A/1280:1285,
1/A/1306:1311		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_6DTI_0511/A/1376:1378,
1/A/1473:1476		No text annotation
geometric
IL_4V88_463
NA
IL_6DTI_0521/A/1378:1381,
1/A/1469:1473		No text annotation
homologous
IL_4LFB_068
IL_65718.4
IL_6DTI_0531/A/1382:1384,
1/A/1466:1468		Isolated non-canonical cWW pair
geometric
IL_3GM7_005
IL_87907.2
IL_6DTI_0541/A/1384:1386,
1/A/1463:1466		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_6DTI_0551/A/1389:1391,
1/A/1458:1460		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_6DTI_0561/A/1393:1396,
1/A/1453:1456		Double sheared
homologous
IL_4LFB_060
IL_09705.15
IL_6DTI_0571/A/1408:1412,
1/A/1438:1441		UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.5
IL_6DTI_0581/A/1412:1414,
1/A/1436:1438		Isolated non-canonical cWW pair
geometric
IL_4LFB_063
IL_87907.2
IL_6DTI_0591/A/1417:1422,
1/A/1431:1433		No text annotation
homologous
IL_4LFB_064
IL_49061.1

Problematic loops

#loop idProblemSequence
IL_6DTI_028No text annotation
IL_6DTI_061Isolated non-canonical cWW with bulges
IL_6DTI_062No text annotation
IL_6DTI_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6DTI_0011/A/46:47,
1/A/357:363,
1/A/389:391		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6DTI_0121/A/46:52,
1/A/355:363,
1/A/389:391		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_6DTI_0021/A/570:572,
1/A/635:638,
1/A/738:739		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_6DTI_0131/A/570:572,
1/A/635:639,
1/A/735:739		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_6DTI_0031/A/656:657,
1/A/701:709,
1/A/716:718		No text annotation
homologous
J3_6CZR_017
NA
J3_6DTI_0041/A/810:813,
1/A/835:839,
1/A/846:852		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_6DTI_0141/A/914:917,
1/A/1321:1327,
1/A/1349:1356		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_6DTI_0051/A/921:924,
1/A/1212:1214,
1/A/1314:1317		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_6DTI_0061/A/933:940,
1/A/951:962,
1/A/1198:1202		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_6DTI_0071/A/968:971,
1/A/1023:1025,
1/A/1187:1192		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_6DTI_0151/A/968:975,
1/A/1022:1025,
1/A/1187:1192		No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_6DTI_0081/A/1041:1046,
1/A/1085:1091,
1/A/1164:1170		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_6DTI_0161/A/1051:1052,
1/A/1061:1064,
1/A/1077:1080		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_6DTI_0101/A/1094:1096,
1/A/1133:1136,
1/A/1158:1161		No text annotation
homologous
J3_4LFB_008
J3_82365.4
J3_6DTI_0171/A/1094:1096,
1/A/1133:1139,
1/A/1152:1161		No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_6DTI_0111/A/1214:1218,
1/A/1273:1280,
1/A/1311:1314		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_6DTI_0011/A/108:115,
1/A/235:236,
1/A/282:285,
1/A/307:308		No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_6DTI_0021/A/136:138,
1/A/172:177,
1/A/201:205,
1/A/215:217		No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_6DTI_0031/A/559:561,
1/A/748:753,
1/A/794:805,
1/A/857:858		No text annotation
homologous
J4_4LFB_003
J4_61885.6
J5_6DTI_0011/A/36:39,
1/A/399:414,
1/A/421:437,
1/A/477:484,
1/A/529:532		No text annotation
J5_6DTI_0021/A/58:61,
1/A/99:106,
1/A/310:312,
1/A/333:335,
1/A/346:350		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J3_6DTI_009No text annotation

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