HL_6DTI_025

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6DTI|1|A|U|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DTI_025 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2773

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6DTI|1|A|G|1112
6DTI|1|A|U|1113
6DTI|1|A|U|1114
6DTI|1|A|C|1115
6DTI|1|A|G|1116
6DTI|1|A|G|1117
6DTI|1|A|C|1118

Current chains

Chain A

16s rRNA

Nearby chains