HL_6DTI_030

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6DTI|1|A|A|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DTI_030 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1283

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6DTI|1|A|C|1424
6DTI|1|A|U|1425
6DTI|1|A|A|1426
6DTI|1|A|C|1427
6DTI|1|A|G|1428
6DTI|1|A|G|1429

Current chains

Chain A

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20