HL_6DZI_002
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UGUCAACCGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZI_002 not in the Motif Atlas
- Homologous match to HL_4WF9_002
- Geometric discrepancy: 0.4652
- The information below is about HL_4WF9_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6DZI|1|A|U|84
6DZI|1|A|G|85
6DZI|1|A|U|86
6DZI|1|A|C|87
6DZI|1|A|A|88
6DZI|1|A|A|89
6DZI|1|A|C|90
6DZI|1|A|C|91
6DZI|1|A|G|92
6DZI|1|A|A|93
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L24
- Chain Z
- 50S ribosomal protein L29
Coloring options: