HL_6DZI_035
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- GUGAGAACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZI_035 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.1839
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6DZI|1|A|G|1396
6DZI|1|A|U|1397
6DZI|1|A|G|1398
6DZI|1|A|A|1399
6DZI|1|A|G|1400
6DZI|1|A|A|1401
6DZI|1|A|A|1402
6DZI|1|A|C|1403
6DZI|1|A|C|1404
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: