HL_6DZI_039

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUUUCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_039 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2311

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6DZI|1|A|C|1582
6DZI|1|A|U|1583
6DZI|1|A|U|1584
6DZI|1|A|U|1585
6DZI|1|A|C|1586
6DZI|1|A|G|1587
6DZI|1|A|G|1588
6DZI|1|A|G|1589

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain t

30S ribosomal protein S11