HL_6DZI_052

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_052 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.422

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|G|2134
6DZI|1|A|U|2135
6DZI|1|A|A|2136
6DZI|1|A|A|2137
6DZI|1|A|C|2138
6DZI|1|A|U|2139
6DZI|1|A|A|2140
6DZI|1|A|U|2141
6DZI|1|A|A|2142
6DZI|1|A|A|2143
6DZI|1|A|C|2144

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain Y

Ribosome hibernation promoting factor

Chain h

Small subunit ribosomal RNA; SSU rRNA