HL_6DZI_053

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6DZI|1|A|A|2176, 6DZI|1|A|U|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_053 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1467

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6DZI|1|A|G|2173
6DZI|1|A|G|2174
6DZI|1|A|U|2175
6DZI|1|A|A|2176
6DZI|1|A|A|2177
6DZI|1|A|G|2178
6DZI|1|A|U|2179
6DZI|1|A|U|2180
6DZI|1|A|C|2181

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain L

50S ribosomal protein L14

Chain h

Small subunit ribosomal RNA; SSU rRNA