HL_6DZI_056

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUAUAUCC

Length

8 nucleotides

Bulged bases

6DZI|1|A|U|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_056 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1935

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6DZI|1|A|G|2432
6DZI|1|A|U|2433
6DZI|1|A|A|2434
6DZI|1|A|U|2435
6DZI|1|A|A|2436
6DZI|1|A|U|2437
6DZI|1|A|C|2438
6DZI|1|A|C|2439

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

50S ribosomal protein L28