HL_6DZI_058

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

6DZI|1|A|A|2492, 6DZI|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_058 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1272

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6DZI|1|A|C|2488
6DZI|1|A|U|2489
6DZI|1|A|A|2490
6DZI|1|A|A|2491
6DZI|1|A|A|2492
6DZI|1|A|A|2493
6DZI|1|A|U|2494
6DZI|1|A|G|2495
6DZI|1|A|U|2496
6DZI|1|A|A|2497
6DZI|1|A|A|2498
6DZI|1|A|C|2499
6DZI|1|A|G|2500

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27