HL_6DZI_063

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

6DZI|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_063 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1571

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6DZI|1|A|U|2628
6DZI|1|A|G|2629
6DZI|1|A|A|2630
6DZI|1|A|G|2631
6DZI|1|A|U|2632
6DZI|1|A|G|2633
6DZI|1|A|G|2634
6DZI|1|A|A|2635
6DZI|1|A|A|2636
6DZI|1|A|G|2637

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L15