HL_6DZI_075
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CAUCCG
- Length
- 6 nucleotides
- Bulged bases
- 6DZI|1|B|U|87, 6DZI|1|B|C|88
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZI_075 not in the Motif Atlas
- Geometric match to HL_2CZJ_007
- Geometric discrepancy: 0.2489
- The information below is about HL_2CZJ_007
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_23696.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
6DZI|1|B|C|85
6DZI|1|B|A|86
6DZI|1|B|U|87
6DZI|1|B|C|88
6DZI|1|B|C|89
6DZI|1|B|G|90
Current chains
- Chain B
- 5S RNA (118-MER)
Nearby chains
- Chain 3
- Uncharacterized protein
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 50S ribosomal protein L25
- Chain a
- 50S ribosomal protein L30
Coloring options: