HL_6DZI_089

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

6DZI|1|h|U|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_089 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.3169

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6DZI|1|h|G|597
6DZI|1|h|C|598
6DZI|1|h|U|599
6DZI|1|h|U|600
6DZI|1|h|A|601
6DZI|1|h|A|602
6DZI|1|h|C|603

Current chains

Chain h

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain z

30S ribosomal protein S16