HL_6DZK_015
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGUGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZK_015 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1884
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6DZK|1|A|C|669
6DZK|1|A|G|670
6DZK|1|A|G|671
6DZK|1|A|U|672
6DZK|1|A|G|673
6DZK|1|A|G|674
6DZK|1|A|A|675
6DZK|1|A|A|676
6DZK|1|A|U|677
6DZK|1|A|G|678
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain Y
- Ribosome hibernation promoting factor
Coloring options: