HL_6DZK_017

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6DZK|1|A|U|773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZK_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1795

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6DZK|1|A|G|766
6DZK|1|A|A|767
6DZK|1|A|U|768
6DZK|1|A|U|769
6DZK|1|A|A|770
6DZK|1|A|G|771
6DZK|1|A|A|772
6DZK|1|A|U|773
6DZK|1|A|A|774
6DZK|1|A|C|775
6DZK|1|A|C|776

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain Y

Ribosome hibernation promoting factor