HL_6DZK_019

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZK_019 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.1677

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6DZK|1|A|C|844
6DZK|1|A|U|845
6DZK|1|A|A|846
6DZK|1|A|A|847
6DZK|1|A|C|848
6DZK|1|A|G|849

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain H

30S ribosomal protein S8