HL_6DZK_024

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZK_024 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1269

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6DZK|1|A|C|1056
6DZK|1|A|G|1057
6DZK|1|A|U|1058
6DZK|1|A|G|1059
6DZK|1|A|A|1060
6DZK|1|A|G|1061

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain V

30S ribosomal protein S2