HL_6DZK_025

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6DZK|1|A|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZK_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2346

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6DZK|1|A|G|1069
6DZK|1|A|U|1070
6DZK|1|A|U|1071
6DZK|1|A|A|1072
6DZK|1|A|A|1073
6DZK|1|A|G|1074
6DZK|1|A|U|1075
6DZK|1|A|C|1076

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain V

30S ribosomal protein S2