HL_6DZP_007

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

6DZP|1|A|U|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.239

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

6DZP|1|A|C|224
6DZP|1|A|A|225
6DZP|1|A|A|226
6DZP|1|A|A|227
6DZP|1|A|A|228
6DZP|1|A|U|229
6DZP|1|A|G|230

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15