HL_6DZP_014
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GGCCCGUGGAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6DZP|1|A|G|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZP_014 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.2747
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DZP|1|A|G|469
6DZP|1|A|G|470
6DZP|1|A|C|471
6DZP|1|A|C|472
6DZP|1|A|C|473
6DZP|1|A|G|474
6DZP|1|A|U|475
6DZP|1|A|G|476
6DZP|1|A|G|477
6DZP|1|A|A|478
6DZP|1|A|A|479
6DZP|1|A|U|480
6DZP|1|A|C|481
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L28
Coloring options: