HL_6DZP_048

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGCAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_048 not in the Motif Atlas

Homologous match to HL_4WF9_042

Geometric discrepancy: 0.1705

The information below is about HL_4WF9_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6DZP|1|A|G|1969
6DZP|1|A|G|1970
6DZP|1|A|C|1971
6DZP|1|A|A|1972
6DZP|1|A|C|1973

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L19