HL_6DZP_052

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_052 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.422

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6DZP|1|A|G|2134
6DZP|1|A|U|2135
6DZP|1|A|A|2136
6DZP|1|A|A|2137
6DZP|1|A|C|2138
6DZP|1|A|U|2139
6DZP|1|A|A|2140
6DZP|1|A|U|2141
6DZP|1|A|A|2142
6DZP|1|A|A|2143
6DZP|1|A|C|2144

Current chains

Chain A

23S rRNA

Nearby chains