HL_6DZP_054

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

6DZP|1|A|A|2254, 6DZP|1|A|A|2255, 6DZP|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_054 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1695

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6DZP|1|A|G|2251
6DZP|1|A|U|2252
6DZP|1|A|A|2253
6DZP|1|A|A|2254
6DZP|1|A|A|2255
6DZP|1|A|G|2256
6DZP|1|A|A|2257
6DZP|1|A|U|2258
6DZP|1|A|G|2259
6DZP|1|A|C|2260

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Uncharacterized protein

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32